Scanning electron micrograph of fungal hyphae and bacteria in a microbial community
EQUIBIOME

ATLASâ„¢

Gut microbiome mapping for horses.

Most gut decisions get made by watching manure and hoping. ATLAS gives you something real to work from: one fecal sample, sequenced to show the bacteria and fungi actually living in the hindgut.

$189

One-time · No subscription · No vet visit required

Collection kit and two-way shipping included · No lab or handling fees

The hindgut does most of the work, and almost none of it gets measured

The hindgut is where equine nutrition and immune tolerance largely happen. The microbial community living there — bacteria and fungi together — shapes how much energy a horse pulls out of forage, how well the gut wall holds up, and how the whole system handles stress and change.

For most horses, that community is never looked at, so decisions get made around it instead: a supplement added, a feed swapped, a slow recovery waited out. That isn't for lack of care on anyone's part — until recently there wasn't a practical way to see inside it.

ATLAS is that way in. Deep bacterial and fungal sequencing of a single fecal sample shows what's present in the hindgut, in what proportions, and how that pattern sits against equine-specific reference ranges. One test gives you a baseline; repeat it after a diet change, an antibiotic course, or a health event and you can see what shifted and whether it recovered.

Without a baseline

You watch the manure, change the feed, add a supplement, and wait — with no way to tell whether any of it helped.

With ATLAS

You can see which microbial groups shifted, by how much, and whether they're recovering — so the next decision has something behind it.

What you compare a result to matters as much as the sequencing itself. Metaboly is Canada's only private equine laboratory sequencing the gut at this depth, and our reference database is the largest equine microbiome dataset in the country, built from horses across different provinces, climates, forage bases, and management styles. That means your horse is read against horses living through the same winters and eating similar hay, rather than against human gut data or a herd on the other side of the world.

In practice: say a horse goes on antibiotics. Test beforehand, test again a few weeks later, and you can see how much the gut community was affected and whether it's rebuilding — rather than guessing from what you can see in the stall.

What you get back

Not a single score with no context — a full report in your Metaboly portal, permanently attached to your horse's record and written so you can actually use it:

Up to 80+ bacterial families identified per sample

Up to 300+ bacterial genera resolved

Fungal community profiling — yeasts and moulds present in the hindgut

Diversity metrics and relative abundance profiling across both bacteria and fungi

Disruption- and stability-associated microbial signatures

Visual community composition plots

Biological pattern interpretation with clinical context

Management and nutritional guidance grounded in microbial data

Longitudinal trend comparison built in across every order

Built for deeper biological visibility

Electron micrograph of a mixed bacterial community embedded in a biofilm matrix

This is the scale ATLAS works at: mixed microbial communities living together in the hindgut rather than single organisms in isolation. Every result sits in your Metaboly portal as an interactive record of diversity, composition, and how those change over time.

The science behind the result

For a detailed grounding in the equine hindgut microbiome — what these microbial communities are, why they matter, and how disruption manifests — visit our dedicated microbiome resource.

Learn about the equine microbiome

How it works — about ten minutes of your time

01

Order & Kit Dispatch

Your collection kit ships with a specialized sample preservation solution and complete instructions. Everything required is included — no additional materials or veterinary coordination needed.

02

Sample Collection

Collect a solid sample from freshly passed manure using the preservation tube provided. ATLAS does not use rectal swabs — swabs only capture surface microbes near the anus, which are not representative of the true hindgut community. No veterinary visit is required.

03

Sequencing & Analysis

Your sample goes through deep bacterial and fungal sequencing, followed by bioinformatic analysis against our equine-specific reference database — built for horses rather than adapted from human datasets. Drawing bacterial, fungal, and parasite data out of a single sample is a genuinely involved workflow, which is why it takes weeks rather than days.

04

Results Delivered to Your Portal

Most reports are finished within about four weeks of sample receipt, and some take up to seven. The report appears in your Metaboly portal, permanently linked to your horse's record and ready to compare against every future test.

Common questions

$189

One-time · No subscription

Collection kit and two-way shipping included

No vet visit, no clinic appointment

No lab fees, handling fees, or subscription

The most useful baseline is the one taken before anything goes wrong

A single result tells you where your horse stands today. It becomes far more useful once there's an earlier test to compare it against, which is why most owners start with a healthy baseline rather than waiting for a problem.

Ask us a question first

Kit and two-way shipping included · No vet visit required · Most results in about 4 weeks